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Sample GSM437721 Query DataSets for GSM437721
Status Public on Jan 13, 2010
Title MCF-7 degraded rep2
Sample type RNA
 
Source name Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics treatment: artificially degraded 95C for 30 minutes
cell type: Breast Adenocarcinoma (MCF-7)
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 07, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17564 Whole-Genome Gene Expression of Formalin-Fixed, Paraffin-Embedded Intact and Artificially Degraded Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
MCF-7 degraded rep2.Avg_NBEADS
MCF-7 degraded rep2.BEAD_STDERR
MCF-7 degraded rep2.Detection Pval

Data table
ID_REF VALUE MCF-7 degraded rep2.Avg_NBEADS MCF-7 degraded rep2.BEAD_STDERR MCF-7 degraded rep2.Detection Pval
ILMN_1762337 316.1326 42 10.86133 0
ILMN_2055271 52.11312 30 2.191417 0.05825243
ILMN_2383229 41.18911 37 2.884758 0.1165049
ILMN_1806310 32.71415 32 2.140084 0.5339806
ILMN_1779670 33.7145 53 2.075408 0.4692557
ILMN_2321282 47.42576 56 2.246362 0.07119741
ILMN_1772582 50.81984 33 2.963767 0.06148867
ILMN_1717783 224.2326 42 15.51838 0
ILMN_1814316 35.24953 34 1.653605 0.3592233
ILMN_2359168 37.48028 33 2.536142 0.2038835
ILMN_1731507 27.21007 35 2.425089 0.9223301
ILMN_1787689 36.63259 36 2.442038 0.2621359
ILMN_1745607 53.17491 45 3.346587 0.05177994
ILMN_2136495 29.37872 32 1.632491 0.815534
ILMN_1668111 27.33518 48 1.147728 0.9190938
ILMN_2295559 32.57535 49 1.68611 0.5372168
ILMN_1735045 430.2357 40 18.58944 0
ILMN_1680754 34.49994 21 1.891201 0.4271845
ILMN_2375184 39.68105 46 1.799204 0.1423948
ILMN_1659452 42.08077 54 1.825818 0.1035599

Total number of rows: 24526

Table truncated, full table size 968 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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