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GEO accession:
Sample GSM437656
Query DataSets for GSM437656
Status
Public on Jan 13, 2010
Title
FF lung tumor #4
Sample type
RNA
Source name
Lung tumor
Organism
Homo sapiens
Characteristics
tissue: lung tumor
Treatment protocol
Fresh-Frozen
Growth protocol
Fresh-Frozen
Extracted molecule
total RNA
Extraction protocol
Fresh-frozen RNA was extracted with a standard Rneasy Kit (Qiagen); FFPE RNA was extracted with a FormaPure Kit (Agencourt Bioscience Corporation)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 4
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 07, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17558
Whole-Genome Gene Expression Profiling of FFPE in Normal and Tumor Lung Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FF Lung TUM #4.Avg_NBEADS
FF Lung TUM #4.BEAD_STDERR
FF Lung TUM #4.Detection Pval
Data table
ID_REF
VALUE
FF Lung TUM #4.Avg_NBEADS
FF Lung TUM #4.BEAD_STDERR
FF Lung TUM #4.Detection Pval
ILMN_1762337
369.4236
54
17.12439
0
ILMN_2055271
156.811
38
9.237291
0.03883495
ILMN_2383229
81.91206
30
7.54202
0.4530744
ILMN_1806310
75.47784
37
5.93947
0.592233
ILMN_1779670
82.00396
38
5.136529
0.4530744
ILMN_2321282
98.31924
39
7.263672
0.1456311
ILMN_1772582
447.4057
36
26.76042
0
ILMN_1717783
170.768
38
11.10103
0.03236246
ILMN_1814316
330.6534
22
18.33975
0
ILMN_2359168
298.4308
36
13.67373
0.003236246
ILMN_1731507
75.62792
35
10.35482
0.592233
ILMN_1787689
76.72946
30
5.496151
0.5598705
ILMN_1745607
4079.572
33
177.3187
0
ILMN_2136495
113.7412
35
9.536126
0.0776699
ILMN_1668111
77.77984
33
9.883914
0.5469255
ILMN_2295559
71.14794
49
5.046449
0.7022654
ILMN_1735045
1047.646
45
65.52361
0
ILMN_1680754
83.45517
26
7.374338
0.4045307
ILMN_2375184
87.52905
36
7.00269
0.3139158
ILMN_1659452
101.1494
34
9.457551
0.1262136
Total number of rows:
24526
Table truncated, full table size
939 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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