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Sample GSM437656 Query DataSets for GSM437656
Status Public on Jan 13, 2010
Title FF lung tumor #4
Sample type RNA
 
Source name Lung tumor
Organism Homo sapiens
Characteristics tissue: lung tumor
Treatment protocol Fresh-Frozen
Growth protocol Fresh-Frozen
Extracted molecule total RNA
Extraction protocol Fresh-frozen RNA was extracted with a standard Rneasy Kit (Qiagen); FFPE RNA was extracted with a FormaPure Kit (Agencourt Bioscience Corporation)
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 4
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 07, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17558 Whole-Genome Gene Expression Profiling of FFPE in Normal and Tumor Lung Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
FF Lung TUM #4.Avg_NBEADS
FF Lung TUM #4.BEAD_STDERR
FF Lung TUM #4.Detection Pval

Data table
ID_REF VALUE FF Lung TUM #4.Avg_NBEADS FF Lung TUM #4.BEAD_STDERR FF Lung TUM #4.Detection Pval
ILMN_1762337 369.4236 54 17.12439 0
ILMN_2055271 156.811 38 9.237291 0.03883495
ILMN_2383229 81.91206 30 7.54202 0.4530744
ILMN_1806310 75.47784 37 5.93947 0.592233
ILMN_1779670 82.00396 38 5.136529 0.4530744
ILMN_2321282 98.31924 39 7.263672 0.1456311
ILMN_1772582 447.4057 36 26.76042 0
ILMN_1717783 170.768 38 11.10103 0.03236246
ILMN_1814316 330.6534 22 18.33975 0
ILMN_2359168 298.4308 36 13.67373 0.003236246
ILMN_1731507 75.62792 35 10.35482 0.592233
ILMN_1787689 76.72946 30 5.496151 0.5598705
ILMN_1745607 4079.572 33 177.3187 0
ILMN_2136495 113.7412 35 9.536126 0.0776699
ILMN_1668111 77.77984 33 9.883914 0.5469255
ILMN_2295559 71.14794 49 5.046449 0.7022654
ILMN_1735045 1047.646 45 65.52361 0
ILMN_1680754 83.45517 26 7.374338 0.4045307
ILMN_2375184 87.52905 36 7.00269 0.3139158
ILMN_1659452 101.1494 34 9.457551 0.1262136

Total number of rows: 24526

Table truncated, full table size 939 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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