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GEO accession:
Sample GSM437647
Query DataSets for GSM437647
Status
Public on Jan 13, 2010
Title
FFPE lung tumor #3
Sample type
RNA
Source name
Lung tumor
Organism
Homo sapiens
Characteristics
tissue: lung tumor
Treatment protocol
Formalin-fixed, paraffin-embedded
Growth protocol
Formalin-fixed, paraffin-embedded
Extracted molecule
total RNA
Extraction protocol
Fresh-frozen RNA was extracted with a standard Rneasy Kit (Qiagen); FFPE RNA was extracted with a FormaPure Kit (Agencourt Bioscience Corporation)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 3
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 07, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17558
Whole-Genome Gene Expression Profiling of FFPE in Normal and Tumor Lung Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE Lung TUM #3.Avg_NBEADS
FFPE Lung TUM #3.BEAD_STDERR
FFPE Lung TUM #3.Detection Pval
Data table
ID_REF
VALUE
FFPE Lung TUM #3.Avg_NBEADS
FFPE Lung TUM #3.BEAD_STDERR
FFPE Lung TUM #3.Detection Pval
ILMN_1762337
1168.376
43
53.26192
0
ILMN_2055271
180.298
23
12.30981
0.0420712
ILMN_2383229
84.09129
33
4.806946
0.5307443
ILMN_1806310
69.02528
36
3.696381
0.8673139
ILMN_1779670
79.41566
41
4.073414
0.618123
ILMN_2321282
99.04951
40
6.443028
0.2686084
ILMN_1772582
148.6723
37
6.2163
0.06148867
ILMN_1717783
263.8045
30
15.20325
0.02588997
ILMN_1814316
60.1492
32
4.290113
0.9514563
ILMN_2359168
83.49797
39
5.52508
0.5404531
ILMN_1731507
93.62111
37
8.240842
0.3786408
ILMN_1787689
130.8044
41
6.611561
0.07119741
ILMN_1745607
7996.149
35
363.4007
0
ILMN_2136495
270.6992
29
14.72016
0.02588997
ILMN_1668111
53.83582
27
3.297609
0.987055
ILMN_2295559
77.98312
40
5.561439
0.6634304
ILMN_1735045
3397.954
47
103.0738
0
ILMN_1680754
81.5472
26
5.024376
0.5825243
ILMN_2375184
117.263
48
7.874354
0.1229773
ILMN_1659452
91.36517
45
5.71496
0.4271845
Total number of rows:
24526
Table truncated, full table size
953 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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