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GEO accession:
Sample GSM437646
Query DataSets for GSM437646
Status
Public on Jan 13, 2010
Title
FFPE lung tumor #2
Sample type
RNA
Source name
Lung tumor
Organism
Homo sapiens
Characteristics
tissue: lung tumor
Treatment protocol
Formalin-fixed, paraffin-embedded
Growth protocol
Formalin-fixed, paraffin-embedded
Extracted molecule
total RNA
Extraction protocol
Fresh-frozen RNA was extracted with a standard Rneasy Kit (Qiagen); FFPE RNA was extracted with a FormaPure Kit (Agencourt Bioscience Corporation)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 2
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 07, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17558
Whole-Genome Gene Expression Profiling of FFPE in Normal and Tumor Lung Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE Lung TUM #2.Avg_NBEADS
FFPE Lung TUM #2.BEAD_STDERR
FFPE Lung TUM #2.Detection Pval
Data table
ID_REF
VALUE
FFPE Lung TUM #2.Avg_NBEADS
FFPE Lung TUM #2.BEAD_STDERR
FFPE Lung TUM #2.Detection Pval
ILMN_1762337
1183.137
45
39.1489
0
ILMN_2055271
186.6887
37
6.642304
0.02912621
ILMN_2383229
84.20464
33
5.966078
0.4660194
ILMN_1806310
100.3932
35
10.58223
0.2168285
ILMN_1779670
86.41543
34
6.094367
0.433657
ILMN_2321282
117.8303
29
8.044355
0.1035599
ILMN_1772582
205.7346
40
9.875889
0.02912621
ILMN_1717783
256.9859
32
18.14755
0.01618123
ILMN_1814316
85.90446
31
10.04064
0.4433657
ILMN_2359168
87.0385
34
8.373925
0.4239482
ILMN_1731507
92.12594
39
7.724328
0.3333333
ILMN_1787689
99.41168
36
5.875452
0.2265372
ILMN_1745607
6788.671
50
269.7138
0
ILMN_2136495
620.2296
41
17.36226
0
ILMN_1668111
75.74886
30
7.347207
0.6763754
ILMN_2295559
95.23831
36
8.699283
0.2847897
ILMN_1735045
2977.343
37
129.7054
0
ILMN_1680754
91.91229
28
7.136477
0.3333333
ILMN_2375184
116.9135
43
8.91508
0.1067961
ILMN_1659452
121.4814
37
7.583351
0.1003236
Total number of rows:
24526
Table truncated, full table size
950 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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