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Sample GSM433916 Query DataSets for GSM433916
Status Public on Feb 01, 2010
Title melanoma short-term culture M000921
Sample type genomic
Source name melanoma short-term culture M000921
Organism Homo sapiens
Characteristics disease status: melanoma
melanoma type: patient-derived short-term culture M000921
Treatment protocol cells were grown under standard conditions
Growth protocol melanoma cell lines and short-term cultures were grown as described in Lin et al, Cancer Research (2008), 68:664-673
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from melanomas as described in Lin et al, Cancer Research (2008), 68:664-673. DNA from HapMap normal samples was obtained from Coriell cell repository
Label biotin
Label protocol Standard Affymetrix protocol.
Hybridization protocol Standard Affymetrix protocol.
Scan protocol Standard Affymetrix protocol.
Description hybridized to Affy SNP 6.0
Data processing Probe-level intensities were scaled so that the sample-specific median value is 1000.
For further data processing details, please see: The Cancer Genome Atlas Research Network (2008) Nature, 455:1061-1068.
Submission date Jul 27, 2009
Last update date Feb 04, 2010
Contact name Michael Berger
Organization name The Broad Instititute
Department Cancer Program
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
Platform ID GPL6801
Series (2)
GSE17359 Affymetrix SNP array data for melanoma short-term cultures and cell lines
GSE17593 Melanoma short-term cultures and cell lines: expression profiling and CNV analyses

Data table header descriptions
VALUE signal intensity

Data table
SNP_A-2131660 3066.713
SNP_A-1967418 503.5
SNP_A-1969580 2887
SNP_A-4263484 1480.5
SNP_A-1978185 1180.5
SNP_A-4264431 1413.5
SNP_A-1980898 1063.7775
SNP_A-1983139 2013
SNP_A-4265735 1449
SNP_A-1995832 1470
SNP_A-1995893 1842.877
SNP_A-1997689 2457
SNP_A-1997709 1280.5
SNP_A-1997896 1107.4245
SNP_A-1997922 1054.5
SNP_A-2000230 2433
SNP_A-2000332 2348.0545
SNP_A-2000337 1250.5
SNP_A-2000342 2204.554
SNP_A-4268173 1119

Total number of rows: 1855448

Table truncated, full table size 36709 Kbytes.

Supplementary file Size Download File type/resource
GSM433916.CEL.gz 29.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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