|
| Status |
Public on Mar 14, 2021 |
| Title |
Sample_5_AML1566_AraC_repl2_RNAseq |
| Sample type |
SRA |
| |
|
| Source name |
AML ex vivo
|
| Organism |
Homo sapiens |
| Characteristics |
agent: AraC (1000nM)
time point: 24h
|
| Treatment protocol |
Included as additional column of SAMPLES section
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA-seq libraries were prepared using the TruSeq RNA Kit according to the manufacturer
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
human patient-derived AML cells
|
| Data processing |
Illumina Casava1.8 software used for basecalling.
RNA-seq reads were aligned to hg19 using STAR with default parameters
TPM were obtained using Rsubread using RefSeq
Genome_build: hg19
Supplementary_files_format_and_content: TPM
|
| |
|
| Submission date |
Feb 10, 2020 |
| Last update date |
Mar 14, 2021 |
| Contact name |
Matt Teater |
| E-mail(s) |
mrt2001@med.cornell.edu
|
| Organization name |
Weill Cornell Medical College
|
| Street address |
445 E 69th St
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10021 |
| Country |
USA |
| |
|
| Platform ID |
GPL16791 |
| Series (2) |
| GSE145061 |
Acute myeloid leukemia cells resist chemotherapy through a transient senescence-like state [RNA-seq] |
| GSE146544 |
Acute myeloid leukemia cells resist chemotherapy through a transient senescence-like state |
|
| Relations |
| BioSample |
SAMN14080121 |
| SRA |
SRX7704631 |
