 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Sep 08, 2020 |
| Title |
Young_WT__246_2_CGATGTTT (whs v17) |
| Sample type |
SRA |
| |
|
| Source name |
oocyte
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL6/129
age: old(10-12M)
genotype: wild type
cell type: single MII oocyte
|
| Extracted molecule |
total RNA |
| Extraction protocol |
For oocyte sequence, we obtained 133 ovulated oocytes; for PGC sequence, we purified E13.5 PGC from 4-6 embryos each group
oocyte library were prepared using standard Illumina protocols; PGC library were prepared according to micro RNA construction
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
HiSeq X Ten |
| |
|
| Description |
whs_v17.txt
|
| Data processing |
we analysed the raw data of fq.gz files by Hisat2,samtools and featurecounts to get the raw counts.
Genome_build: mm10
Supplementary_files_format_and_content: The reads counts of 133 samples, containg young WT, young Tet2-/-, old WT and old Tet2-/-, and some of Tet1 samples.
|
| |
|
| Submission date |
Dec 17, 2019 |
| Last update date |
Sep 08, 2020 |
| Contact name |
wang hua song |
| E-mail(s) |
2120160958@mail.nankai.edu.cn
|
| Organization name |
nankai university
|
| Street address |
Tianjin city, China
|
| City |
Tianjin |
| ZIP/Postal code |
300071 |
| Country |
China |
| |
|
| Platform ID |
GPL21273 |
| Series (1) |
| GSE142163 |
Oocyte RNA-seq data of WT, Tet1-/- and Tet2-/-; RNA seq of PGC at E13.5 |
|
| Relations |
| BioSample |
SAMN13612363 |
| SRA |
SRX7396462 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
|
|
|
|
 |
