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Sample GSM419020 Query DataSets for GSM419020
Status Public on Jun 01, 2010
Title Blood from colon cancer patient HRCRC-93
Sample type genomic
 
Source name blood
Organism Homo sapiens
Characteristics disease state: colon cancer
tissue: blood
histoculture drug response assay: FL = 44
histoculture drug response assay: CAPE = 10
histoculture drug response assay: FLOX = 33
histoculture drug response assay: FLIRI = 12
Extracted molecule genomic DNA
Extraction protocol standard Affymetrix protocol
Label Biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Hybridized to SNP 5.0 array
Data processing BRLMM-P algorithm was applied to obtain call and signal intensities
 
Submission date Jun 19, 2009
Last update date Jun 22, 2009
Contact name Seon-Young Kim
E-mail(s) kimsy@kribb.re.kr
Phone 82-42-879-8116
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Genome Research Center
Lab Human Genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejon
ZIP/Postal code 305333
Country South Korea
 
Platform ID GPL6804
Series (1)
GSE16718 Identification of novel SNP candidates associated with chemo-responsiveness in colorectal cancers

Data table header descriptions
ID_REF PROBE SET NAME
VALUE SNP genotype call
CONFIDENCE
FORCED CALL
CONTRAST
STRENGTH

Data table
ID_REF VALUE CONFIDENCE FORCED CALL CONTRAST STRENGTH
SNP_A-1780520 BB 0.000000 BB -0.738145 10.467239
SNP_A-1780618 AA 0.000000 AA 0.610540 10.118859
SNP_A-1780632 AA 0.000000 AA 0.767271 10.937446
SNP_A-1780654 AA 0.000000 AA 0.873997 11.865433
SNP_A-4192495 AB 0.000000 AB -0.165387 11.759090
SNP_A-4192498 AB 0.000000 AB 0.099060 11.483984
SNP_A-1780732 AB 0.000000 AB 0.185397 10.599030
SNP_A-1780848 AB 0.000000 AB 0.130534 10.748653
SNP_A-1780985 AA 0.000000 AA 0.649344 10.111927
SNP_A-1781076 AB 0.000000 AB -0.196098 10.607824
SNP_A-1781249 AB 0.000000 AB 0.025768 12.113353
SNP_A-1781276 AA 0.000000 AA 0.534302 10.858282
SNP_A-1781302 BB 0.000000 BB -0.752395 10.710238
SNP_A-1781510 AA 0.000167 AA 0.778095 11.322012
SNP_A-4192564 BB 0.000000 BB -0.657042 10.742237
SNP_A-1781614 AB 0.000000 AB 0.243106 10.657622
SNP_A-1781764 AA 0.000000 AA 0.835646 12.362188
SNP_A-1781829 AA 0.000000 AA 0.660503 11.713191
SNP_A-1782155 AA 0.000000 AA 0.585738 10.392994
SNP_A-1782305 BB 0.000000 BB -0.612414 11.168440

Total number of rows: 443816

Table truncated, full table size 20941 Kbytes.




Supplementary file Size Download File type/resource
GSM419020_HRCRC-93.CEL.gz 22.2 Mb (ftp)(http) CEL
GSM419020_HRCRC-93.brlmm-p.chp.gz 5.7 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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