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Sample GSM419002 Query DataSets for GSM419002
Status Public on Jun 01, 2010
Title Blood from colon cancer patient HRCRC-76
Sample type genomic
 
Source name blood
Organism Homo sapiens
Characteristics disease state: colon cancer
tissue: blood
histoculture drug response assay: FL = 26
histoculture drug response assay: CAPE = 42
histoculture drug response assay: FLOX = 47
histoculture drug response assay: FLIRI = 25
Extracted molecule genomic DNA
Extraction protocol standard Affymetrix protocol
Label Biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Hybridized to SNP 5.0 array
Data processing BRLMM-P algorithm was applied to obtain call and signal intensities
 
Submission date Jun 19, 2009
Last update date Jun 22, 2009
Contact name Seon-Young Kim
E-mail(s) kimsy@kribb.re.kr
Phone 82-42-879-8116
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Genome Research Center
Lab Human Genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejon
ZIP/Postal code 305333
Country South Korea
 
Platform ID GPL6804
Series (1)
GSE16718 Identification of novel SNP candidates associated with chemo-responsiveness in colorectal cancers

Data table header descriptions
ID_REF PROBE SET NAME
VALUE SNP genotype call
CONFIDENCE
FORCED CALL
CONTRAST
STRENGTH

Data table
ID_REF VALUE CONFIDENCE FORCED CALL CONTRAST STRENGTH
SNP_A-1780520 BB 0.000000 BB -0.661577 10.352206
SNP_A-1780618 AA 0.000000 AA 0.679497 10.294214
SNP_A-1780632 AB 0.000002 AB 0.359082 10.707434
SNP_A-1780654 AA 0.000000 AA 0.869003 11.639218
SNP_A-4192495 AB 0.000000 AB -0.219348 11.989327
SNP_A-4192498 BB 0.000000 BB -0.792225 11.065596
SNP_A-1780732 BB 0.000000 BB -0.713922 10.504082
SNP_A-1780848 BB 0.000000 BB -0.630815 10.886228
SNP_A-1780985 AB 0.000000 AB 0.083341 10.198742
SNP_A-1781076 BB 0.000000 BB -0.796499 10.611592
SNP_A-1781249 AA 0.000000 AA 0.589247 12.057912
SNP_A-1781276 AA 0.000000 AA 0.563928 10.552103
SNP_A-1781302 BB 0.000000 BB -0.660489 10.887253
SNP_A-1781510 AA 0.000007 AA 0.810679 11.237778
SNP_A-4192564 BB 0.000000 BB -0.727063 10.922979
SNP_A-1781614 AB 0.000000 AB 0.300639 10.746682
SNP_A-1781764 AB 0.000000 AB 0.093883 12.532670
SNP_A-1781829 AA 0.000000 AA 0.650222 11.905394
SNP_A-1782155 AA 0.000000 AA 0.611060 10.248217
SNP_A-1782305 AA 0.000000 AA 0.821924 11.493812

Total number of rows: 443816

Table truncated, full table size 20940 Kbytes.




Supplementary file Size Download File type/resource
GSM419002_HRCRC-76.CEL.gz 22.5 Mb (ftp)(http) CEL
GSM419002_HRCRC-76.brlmm-p.chp.gz 5.7 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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