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Sample GSM418981 Query DataSets for GSM418981
Status Public on Jun 01, 2010
Title Blood from colon cancer patient HRCRC-50
Sample type genomic
 
Source name blood
Organism Homo sapiens
Characteristics disease state: colon cancer
tissue: blood
histoculture drug response assay: FL = 16
histoculture drug response assay: CAPE = 19
histoculture drug response assay: FLOX = 35
histoculture drug response assay: FLIRI = 23
Extracted molecule genomic DNA
Extraction protocol standard Affymetrix protocol
Label Biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Hybridized to SNP 5.0 array
Data processing BRLMM-P algorithm was applied to obtain call and signal intensities
 
Submission date Jun 19, 2009
Last update date Jun 22, 2009
Contact name Seon-Young Kim
E-mail(s) kimsy@kribb.re.kr
Phone 82-42-879-8116
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Genome Research Center
Lab Human Genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejon
ZIP/Postal code 305333
Country South Korea
 
Platform ID GPL6804
Series (1)
GSE16718 Identification of novel SNP candidates associated with chemo-responsiveness in colorectal cancers

Data table header descriptions
ID_REF PROBE SET NAME
VALUE SNP genotype call
CONFIDENCE
FORCED CALL
CONTRAST
STRENGTH

Data table
ID_REF VALUE CONFIDENCE FORCED CALL CONTRAST STRENGTH
SNP_A-1780520 BB 0.000000 BB -0.742353 10.396874
SNP_A-1780618 BB 0.000000 BB -0.655686 10.013661
SNP_A-1780632 AB 0.000000 AB 0.239808 10.196113
SNP_A-1780654 AA 0.000000 AA 0.819075 11.360168
SNP_A-4192495 BB 0.000000 BB -0.807097 11.692527
SNP_A-4192498 AB 0.000000 AB 0.150241 10.775029
SNP_A-1780732 AB 0.000000 AB 0.167515 10.753927
SNP_A-1780848 AB 0.000000 AB 0.197373 10.332625
SNP_A-1780985 AB 0.000000 AB 0.105417 9.437006
SNP_A-1781076 AB 0.000000 AB -0.296481 11.199850
SNP_A-1781249 AA 0.000000 AA 0.523894 11.733923
SNP_A-1781276 AA 0.000000 AA 0.388261 10.692111
SNP_A-1781302 AB 0.000000 AB 0.268386 11.654130
SNP_A-1781510 NC 0.341744 AB 0.681357 11.052800
SNP_A-4192564 BB 0.000000 BB -0.719555 11.277842
SNP_A-1781614 AB 0.000000 AB 0.220134 11.279543
SNP_A-1781764 AA 0.000000 AA 0.789494 12.287933
SNP_A-1781829 AA 0.000000 AA 0.669955 11.880004
SNP_A-1782155 AA 0.000000 AA 0.565566 10.384167
SNP_A-1782305 AB 0.000000 AB 0.109840 12.155336

Total number of rows: 443816

Table truncated, full table size 20943 Kbytes.




Supplementary file Size Download File type/resource
GSM418981_HRCRC-50.CEL.gz 21.4 Mb (ftp)(http) CEL
GSM418981_HRCRC-50.brlmm-p.chp.gz 5.9 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file
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