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Sample GSM418978 Query DataSets for GSM418978
Status Public on Jun 01, 2010
Title Blood from colon cancer patient HRCRC-47
Sample type genomic
 
Source name blood
Organism Homo sapiens
Characteristics disease state: colon cancer
tissue: blood
histoculture drug response assay: FL = 28
histoculture drug response assay: CAPE = 42
histoculture drug response assay: FLOX = 45
histoculture drug response assay: FLIRI = 35
Extracted molecule genomic DNA
Extraction protocol standard Affymetrix protocol
Label Biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Hybridized to SNP 5.0 array
Data processing BRLMM-P algorithm was applied to obtain call and signal intensities
 
Submission date Jun 19, 2009
Last update date Jun 22, 2009
Contact name Seon-Young Kim
E-mail(s) kimsy@kribb.re.kr
Phone 82-42-879-8116
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Genome Research Center
Lab Human Genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejon
ZIP/Postal code 305333
Country South Korea
 
Platform ID GPL6804
Series (1)
GSE16718 Identification of novel SNP candidates associated with chemo-responsiveness in colorectal cancers

Data table header descriptions
ID_REF PROBE SET NAME
VALUE SNP genotype call
CONFIDENCE
FORCED CALL
CONTRAST
STRENGTH

Data table
ID_REF VALUE CONFIDENCE FORCED CALL CONTRAST STRENGTH
SNP_A-1780520 BB 0.000000 BB -0.815924 10.439235
SNP_A-1780618 BB 0.000000 BB -0.710395 10.293613
SNP_A-1780632 AA 0.000000 AA 0.697279 10.484941
SNP_A-1780654 AA 0.000000 AA 0.843879 11.334247
SNP_A-4192495 AA 0.000000 AA 0.616674 11.214183
SNP_A-4192498 BB 0.000000 BB -0.715145 10.246053
SNP_A-1780732 AA 0.000000 AA 0.694963 10.733621
SNP_A-1780848 BB 0.000000 BB -0.473181 10.549213
SNP_A-1780985 AA 0.000000 AA 0.504533 9.813669
SNP_A-1781076 BB 0.000000 BB -0.832810 11.320676
SNP_A-1781249 AB 0.000001 AB 0.136564 11.428636
SNP_A-1781276 NC 0.249298 AB 0.089533 10.289797
SNP_A-1781302 BB 0.000000 BB -0.750380 10.931036
SNP_A-1781510 NC 0.077881 AA 0.713702 11.137629
SNP_A-4192564 BB 0.000000 BB -0.772472 11.163712
SNP_A-1781614 AA 0.000000 AA 0.873034 11.072363
SNP_A-1781764 AA 0.000000 AA 0.758667 12.217978
SNP_A-1781829 AA 0.000000 AA 0.666195 11.954343
SNP_A-1782155 AA 0.000000 AA 0.608820 10.218416
SNP_A-1782305 AB 0.000000 AB 0.200308 12.043070

Total number of rows: 443816

Table truncated, full table size 20945 Kbytes.




Supplementary file Size Download File type/resource
GSM418978_HRCRC-47.CEL.gz 21.9 Mb (ftp)(http) CEL
GSM418978_HRCRC-47.brlmm-p.chp.gz 5.8 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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