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Sample GSM418968 Query DataSets for GSM418968
Status Public on Jun 01, 2010
Title Blood from colon cancer patient HRCRC-37
Sample type genomic
 
Source name blood
Organism Homo sapiens
Characteristics disease state: colon cancer
tissue: blood
histoculture drug response assay: FL = 21
histoculture drug response assay: CAPE = 37
histoculture drug response assay: FLOX = 39
histoculture drug response assay: FLIRI = 18
Extracted molecule genomic DNA
Extraction protocol standard Affymetrix protocol
Label Biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Hybridized to SNP 5.0 array
Data processing BRLMM-P algorithm was applied to obtain call and signal intensities
 
Submission date Jun 19, 2009
Last update date Jun 22, 2009
Contact name Seon-Young Kim
E-mail(s) kimsy@kribb.re.kr
Phone 82-42-879-8116
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Genome Research Center
Lab Human Genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejon
ZIP/Postal code 305333
Country South Korea
 
Platform ID GPL6804
Series (1)
GSE16718 Identification of novel SNP candidates associated with chemo-responsiveness in colorectal cancers

Data table header descriptions
ID_REF PROBE SET NAME
VALUE SNP genotype call
CONFIDENCE
FORCED CALL
CONTRAST
STRENGTH

Data table
ID_REF VALUE CONFIDENCE FORCED CALL CONTRAST STRENGTH
SNP_A-1780520 BB 0.000000 BB -0.701327 10.267519
SNP_A-1780618 AA 0.000000 AA 0.715899 10.196094
SNP_A-1780632 AB 0.000000 AB 0.119940 10.358294
SNP_A-1780654 AA 0.000000 AA 0.821663 11.104692
SNP_A-4192495 AB 0.000005 AB -0.352357 11.388576
SNP_A-4192498 AA 0.000000 AA 0.554540 10.559420
SNP_A-1780732 BB 0.000000 BB -0.746101 10.650773
SNP_A-1780848 BB 0.000072 BB -0.401586 10.426025
SNP_A-1780985 AB 0.000000 AB 0.092220 9.515702
SNP_A-1781076 AB 0.000000 AB -0.366549 11.369128
SNP_A-1781249 AB 0.000000 AB 0.015164 11.201315
SNP_A-1781276 AA 0.000000 AA 0.572458 10.403613
SNP_A-1781302 AB 0.000000 AB 0.276306 11.451380
SNP_A-1781510 AB 0.000373 AB 0.606498 11.005649
SNP_A-4192564 BB 0.000000 BB -0.757796 11.450495
SNP_A-1781614 AA 0.000000 AA 0.905284 11.518458
SNP_A-1781764 BB 0.000000 BB -0.677470 12.031443
SNP_A-1781829 AA 0.000000 AA 0.664536 12.065779
SNP_A-1782155 AA 0.000000 AA 0.529592 10.122437
SNP_A-1782305 AB 0.000000 AB 0.244182 12.331085

Total number of rows: 443816

Table truncated, full table size 20945 Kbytes.




Supplementary file Size Download File type/resource
GSM418968_HRCRC-37.CEL.gz 21.9 Mb (ftp)(http) CEL
GSM418968_HRCRC-37.brlmm-p.chp.gz 5.8 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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