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Sample GSM418955 Query DataSets for GSM418955
Status Public on Jun 01, 2010
Title Blood from colon cancer patient HRCRC-23
Sample type genomic
 
Source name blood
Organism Homo sapiens
Characteristics disease state: colon cancer
tissue: blood
histoculture drug response assay: FL = 53
histoculture drug response assay: CAPE = 64
histoculture drug response assay: FLOX = 52
histoculture drug response assay: FLIRI = 18
Extracted molecule genomic DNA
Extraction protocol standard Affymetrix protocol
Label Biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Hybridized to SNP 5.0 array
Data processing BRLMM-P algorithm was applied to obtain call and signal intensities
 
Submission date Jun 19, 2009
Last update date Jun 22, 2009
Contact name Seon-Young Kim
E-mail(s) kimsy@kribb.re.kr
Phone 82-42-879-8116
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Genome Research Center
Lab Human Genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejon
ZIP/Postal code 305333
Country South Korea
 
Platform ID GPL6804
Series (1)
GSE16718 Identification of novel SNP candidates associated with chemo-responsiveness in colorectal cancers

Data table header descriptions
ID_REF PROBE SET NAME
VALUE SNP genotype call
CONFIDENCE
FORCED CALL
CONTRAST
STRENGTH

Data table
ID_REF VALUE CONFIDENCE FORCED CALL CONTRAST STRENGTH
SNP_A-1780520 BB 0.000000 BB -0.740998 10.441548
SNP_A-1780618 BB 0.000000 BB -0.638131 10.577200
SNP_A-1780632 AA 0.000000 AA 0.738498 11.035067
SNP_A-1780654 AA 0.000000 AA 0.864243 11.527200
SNP_A-4192495 BB 0.000000 BB -0.821853 11.810615
SNP_A-4192498 BB 0.000000 BB -0.823812 11.024429
SNP_A-1780732 AB 0.000000 AB 0.204111 10.845320
SNP_A-1780848 BB 0.000000 BB -0.663549 10.441790
SNP_A-1780985 AB 0.007237 AB -0.307161 10.137215
SNP_A-1781076 BB 0.000000 BB -0.837257 11.125341
SNP_A-1781249 AB 0.000000 AB 0.035798 12.091981
SNP_A-1781276 AA 0.000000 AA 0.553121 11.141534
SNP_A-1781302 BB 0.000000 BB -0.754795 10.808649
SNP_A-1781510 AB 0.000000 AB 0.310962 10.452351
SNP_A-4192564 BB 0.000000 BB -0.688446 10.594878
SNP_A-1781614 AA 0.000000 AA 0.803577 10.377769
SNP_A-1781764 AB 0.000000 AB -0.010612 12.704242
SNP_A-1781829 AA 0.000000 AA 0.574288 11.737856
SNP_A-1782155 AA 0.000000 AA 0.742891 10.447423
SNP_A-1782305 AB 0.000000 AB -0.076629 11.187897

Total number of rows: 443816

Table truncated, full table size 20937 Kbytes.




Supplementary file Size Download File type/resource
GSM418955_HRCRC-23.CEL.gz 19.8 Mb (ftp)(http) CEL
GSM418955_HRCRC-23.brlmm-p.chp.gz 5.8 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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