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Sample GSM418944 Query DataSets for GSM418944
Status Public on Jun 01, 2010
Title Blood from colon cancer patient HRCRC-13
Sample type genomic
 
Source name blood
Organism Homo sapiens
Characteristics disease state: colon cancer
tissue: blood
histoculture drug response assay: FL = 22
histoculture drug response assay: CAPE = 33
histoculture drug response assay: FLOX = 39
histoculture drug response assay: FLIRI = 36
Extracted molecule genomic DNA
Extraction protocol standard Affymetrix protocol
Label Biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description Hybridized to SNP 5.0 array
Data processing BRLMM-P algorithm was applied to obtain call and signal intensities
 
Submission date Jun 19, 2009
Last update date Jun 22, 2009
Contact name Seon-Young Kim
E-mail(s) kimsy@kribb.re.kr
Phone 82-42-879-8116
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Genome Research Center
Lab Human Genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejon
ZIP/Postal code 305333
Country South Korea
 
Platform ID GPL6804
Series (1)
GSE16718 Identification of novel SNP candidates associated with chemo-responsiveness in colorectal cancers

Data table header descriptions
ID_REF PROBE SET NAME
VALUE SNP genotype call
CONFIDENCE
FORCED CALL
CONTRAST
STRENGTH

Data table
ID_REF VALUE CONFIDENCE FORCED CALL CONTRAST STRENGTH
SNP_A-1780520 BB 0.000000 BB -0.769822 10.351234
SNP_A-1780618 AA 0.000000 AA 0.493736 10.176729
SNP_A-1780632 AA 0.000000 AA 0.669345 10.629286
SNP_A-1780654 AA 0.000000 AA 0.894952 11.693091
SNP_A-4192495 BB 0.000000 BB -0.833278 11.862516
SNP_A-4192498 AA 0.000000 AA 0.689463 11.260317
SNP_A-1780732 AB 0.000000 AB 0.055674 10.566048
SNP_A-1780848 BB 0.000000 BB -0.495674 10.750826
SNP_A-1780985 AB 0.000001 AB 0.122937 10.099872
SNP_A-1781076 BB 0.000000 BB -0.851867 10.811078
SNP_A-1781249 AB 0.000000 AB 0.009342 12.040212
SNP_A-1781276 AB 0.000100 AB -0.021895 10.628602
SNP_A-1781302 AA 0.000000 AA 0.662108 11.420888
SNP_A-1781510 AA 0.000286 AA 0.772530 11.291366
SNP_A-4192564 BB 0.000000 BB -0.797322 10.874017
SNP_A-1781614 AB 0.000000 AB 0.326884 10.903269
SNP_A-1781764 AB 0.000000 AB 0.071675 12.406287
SNP_A-1781829 AA 0.000000 AA 0.676159 11.669037
SNP_A-1782155 AA 0.000000 AA 0.593274 10.364976
SNP_A-1782305 AA 0.000000 AA 0.860207 11.493565

Total number of rows: 443816

Table truncated, full table size 20948 Kbytes.




Supplementary file Size Download File type/resource
GSM418944_HRCRC-13.CEL.gz 20.8 Mb (ftp)(http) CEL
GSM418944_HRCRC-13.brlmm-p.chp.gz 5.7 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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