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Sample GSM411405 Query DataSets for GSM411405
Status Public on Jan 26, 2010
Title XXX_2621
Sample type RNA
 
Source name XXX_2621
Organism Homo sapiens
Characteristics agebin: 0
t: T2
n: N1
her2fish: 3.87
her2fishbin: 1
top2atri: 1
topoihc: 25
esr1bimod: 0
erbb2bimod: 1
final_analysis: YES
pcr: 1
dmfs_event: 0
dmfs_time: 2086
os_event: 0
os_time: 2086
Extracted molecule total RNA
Extraction protocol Isolation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)olation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc).
Label biotin
Label protocol Approximately 1 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures.
Scan protocol standard Affymetrix procedures.
Description Please see the GSE16446_TOP_README.txt supplementary file on the Series record for a definition of the clinical characteristics
Data processing RMA Bioconductor (default parameters) and log2 transformation.
 
Submission date Jun 02, 2009
Last update date Jun 06, 2022
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL570
Series (1)
GSE16446 Multifactorial Approach to Predicting Resistance to Anthracyclines
Relations
Reanalyzed by GSE205568

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 9.972810833
1053_at 7.712214172
117_at 6.16264139
121_at 7.814703403
1255_g_at 3.010275662
1294_at 7.277787487
1316_at 5.105119345
1320_at 4.621221532
1405_i_at 8.783031751
1431_at 3.289753625
1438_at 6.358913678
1487_at 7.255045571
1494_f_at 5.386265394
1552256_a_at 8.714582471
1552257_a_at 8.806209216
1552258_at 4.243246813
1552261_at 4.613854499
1552263_at 6.511033152
1552264_a_at 7.808954097
1552266_at 4.125809282

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM411405.CEL.gz 7.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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