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Sample GSM411402 Query DataSets for GSM411402
Status Public on Jan 26, 2010
Title XXX_1767
Sample type RNA
 
Source name XXX_1767
Organism Homo sapiens
Characteristics agebin: 0
t: T2
n: N0
grade: 2
her2fish: 2.25
her2fishbin: 1
top2atri: 1
topoihc: 10
esr1bimod: 0
erbb2bimod: 0
final_analysis: YES
pcr: 1
dmfs_event: 0
dmfs_time: 2011
os_event: 0
os_time: 2011
Extracted molecule total RNA
Extraction protocol Isolation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)olation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc).
Label biotin
Label protocol Approximately 1 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures.
Scan protocol standard Affymetrix procedures.
Description Please see the GSE16446_TOP_README.txt supplementary file on the Series record for a definition of the clinical characteristics
Data processing RMA Bioconductor (default parameters) and log2 transformation.
 
Submission date Jun 02, 2009
Last update date Jun 06, 2022
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL570
Series (1)
GSE16446 Multifactorial Approach to Predicting Resistance to Anthracyclines
Relations
Reanalyzed by GSE205568

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 9.386356673
1053_at 7.448367055
117_at 6.72422891
121_at 7.484428191
1255_g_at 3.612744461
1294_at 6.630481579
1316_at 5.32363446
1320_at 4.921348572
1405_i_at 8.038669308
1431_at 3.059137253
1438_at 8.811706103
1487_at 7.20365466
1494_f_at 4.979259915
1552256_a_at 9.462986848
1552257_a_at 8.343667636
1552258_at 4.581725949
1552261_at 4.097508482
1552263_at 6.274365636
1552264_a_at 8.08970522
1552266_at 3.54882386

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM411402.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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