NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM411401 Query DataSets for GSM411401
Status Public on Jan 26, 2010
Title XXX_6519
Sample type RNA
 
Source name XXX_6519
Organism Homo sapiens
Characteristics agebin: 1
t: T4
n: N0
grade: 3
her2fish: 1.18
her2fishbin: 0
top2atri: 0
topoihc: 15
esr1bimod: 0
erbb2bimod: 0
final_analysis: YES
pcr: 1
dmfs_event: 0
dmfs_time: 2019
os_event: 0
os_time: 2019
Extracted molecule total RNA
Extraction protocol Isolation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)olation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc).
Label biotin
Label protocol Approximately 1 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures.
Scan protocol standard Affymetrix procedures.
Description Please see the GSE16446_TOP_README.txt supplementary file on the Series record for a definition of the clinical characteristics
Data processing RMA Bioconductor (default parameters) and log2 transformation.
 
Submission date Jun 02, 2009
Last update date Jun 06, 2022
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL570
Series (1)
GSE16446 Multifactorial Approach to Predicting Resistance to Anthracyclines
Relations
Reanalyzed by GSE205568

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 10.05476164
1053_at 7.859692088
117_at 6.33885652
121_at 7.592028748
1255_g_at 3.162891206
1294_at 6.926919464
1316_at 5.314858272
1320_at 5.262336006
1405_i_at 8.580017148
1431_at 3.097575252
1438_at 8.560597188
1487_at 6.90287727
1494_f_at 5.036324397
1552256_a_at 8.027064108
1552257_a_at 8.417758537
1552258_at 4.235224006
1552261_at 4.574772591
1552263_at 6.581482987
1552264_a_at 8.438340895
1552266_at 3.761292054

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM411401.CEL.gz 8.0 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap