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Sample GSM411386 Query DataSets for GSM411386
Status Public on Jan 26, 2010
Title XXX_4405
Sample type RNA
 
Source name XXX_4405
Organism Homo sapiens
Characteristics agebin: 0
t: T2
n: N1
grade: 3
her2fish: NA
her2fishbin: NA
top2atri: NA
topoihc: NA
esr1bimod: 0
erbb2bimod: 0
final_analysis: YES
pcr: 0
dmfs_event: 0
dmfs_time: 977
os_event: 0
os_time: 977
Extracted molecule total RNA
Extraction protocol Isolation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)olation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc).
Label biotin
Label protocol Approximately 1 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures.
Scan protocol standard Affymetrix procedures.
Description Please see the GSE16446_TOP_README.txt supplementary file on the Series record for a definition of the clinical characteristics
Data processing RMA Bioconductor (default parameters) and log2 transformation.
 
Submission date Jun 02, 2009
Last update date Jun 06, 2022
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL570
Series (1)
GSE16446 Multifactorial Approach to Predicting Resistance to Anthracyclines
Relations
Reanalyzed by GSE205568

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 11.49100723
1053_at 7.80237775
117_at 5.882201774
121_at 7.617672029
1255_g_at 2.980973776
1294_at 5.941191346
1316_at 5.214525647
1320_at 4.726130727
1405_i_at 4.940725524
1431_at 3.480822265
1438_at 8.976497714
1487_at 7.287082622
1494_f_at 5.908667648
1552256_a_at 8.138614128
1552257_a_at 8.046340658
1552258_at 4.341666715
1552261_at 4.361700931
1552263_at 4.908467664
1552264_a_at 7.953612353
1552266_at 4.693292527

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM411386.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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