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Sample GSM411375 Query DataSets for GSM411375
Status Public on Jan 26, 2010
Title XXX_3041
Sample type RNA
 
Source name XXX_3041
Organism Homo sapiens
Characteristics agebin: 1
t: T2
n: N0
grade: 3
her2fish: NA
her2fishbin: NA
top2atri: NA
topoihc: NA
esr1bimod: 0
erbb2bimod: 0
final_analysis: YES
pcr: 0
dmfs_event: 0
dmfs_time: 1027
os_event: 0
os_time: 1027
Extracted molecule total RNA
Extraction protocol Isolation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)olation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc).
Label biotin
Label protocol Approximately 1 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures.
Scan protocol standard Affymetrix procedures.
Description Please see the GSE16446_TOP_README.txt supplementary file on the Series record for a definition of the clinical characteristics
Data processing RMA Bioconductor (default parameters) and log2 transformation.
 
Submission date Jun 02, 2009
Last update date Jun 06, 2022
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL570
Series (1)
GSE16446 Multifactorial Approach to Predicting Resistance to Anthracyclines
Relations
Reanalyzed by GSE205568

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 9.952999855
1053_at 9.598664166
117_at 6.12359231
121_at 7.455001492
1255_g_at 2.933553996
1294_at 7.068017902
1316_at 5.399952993
1320_at 5.10544771
1405_i_at 8.257847914
1431_at 3.330890133
1438_at 6.941480026
1487_at 7.494627437
1494_f_at 5.828293374
1552256_a_at 7.506201304
1552257_a_at 8.306766315
1552258_at 4.203051684
1552261_at 4.348862081
1552263_at 6.268770187
1552264_a_at 7.441125933
1552266_at 3.573689148

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM411375.CEL.gz 7.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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