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Sample GSM411353 Query DataSets for GSM411353
Status Public on Jan 26, 2010
Title XXX_4511
Sample type RNA
 
Source name XXX_4511
Organism Homo sapiens
Characteristics agebin: 1
t: T3
n: N0
grade: 3
her2fish: 1.34
her2fishbin: 0
top2atri: 0
topoihc: 10
esr1bimod: 0
erbb2bimod: 0
final_analysis: YES
pcr: 0
dmfs_event: 0
dmfs_time: 1839
os_event: 0
os_time: 1839
Extracted molecule total RNA
Extraction protocol Isolation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)olation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc).
Label biotin
Label protocol Approximately 1 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures.
Scan protocol standard Affymetrix procedures.
Description Please see the GSE16446_TOP_README.txt supplementary file on the Series record for a definition of the clinical characteristics
Data processing RMA Bioconductor (default parameters) and log2 transformation.
 
Submission date Jun 02, 2009
Last update date Jun 06, 2022
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL570
Series (1)
GSE16446 Multifactorial Approach to Predicting Resistance to Anthracyclines
Relations
Reanalyzed by GSE205568

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 9.576458139
1053_at 7.458266872
117_at 6.330411425
121_at 7.209450444
1255_g_at 2.642673755
1294_at 7.693321904
1316_at 5.23443421
1320_at 4.517041756
1405_i_at 9.772776228
1431_at 3.470282641
1438_at 9.078407326
1487_at 9.106753794
1494_f_at 5.52633158
1552256_a_at 9.203636978
1552257_a_at 8.170291168
1552258_at 3.43396329
1552261_at 4.640052821
1552263_at 6.715388368
1552264_a_at 7.745702864
1552266_at 3.846775736

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM411353.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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