NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM411351 Query DataSets for GSM411351
Status Public on Jan 26, 2010
Title XXX_3414
Sample type RNA
 
Source name XXX_3414
Organism Homo sapiens
Characteristics agebin: 1
t: T2
n: N1
grade: 3
her2fish: 7.5
her2fishbin: 1
top2atri: 0
topoihc: 20
esr1bimod: 0
erbb2bimod: 1
final_analysis: YES
pcr: 0
dmfs_event: 1
dmfs_time: 254
os_event: 0
os_time: 2187
Extracted molecule total RNA
Extraction protocol Isolation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)olation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc).
Label biotin
Label protocol Approximately 1 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures.
Scan protocol standard Affymetrix procedures.
Description Please see the GSE16446_TOP_README.txt supplementary file on the Series record for a definition of the clinical characteristics
Data processing RMA Bioconductor (default parameters) and log2 transformation.
 
Submission date Jun 02, 2009
Last update date Jun 06, 2022
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL570
Series (1)
GSE16446 Multifactorial Approach to Predicting Resistance to Anthracyclines
Relations
Reanalyzed by GSE205568

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 9.983149278
1053_at 7.811973611
117_at 6.813657929
121_at 7.762558767
1255_g_at 2.886677692
1294_at 7.129719304
1316_at 4.964357219
1320_at 4.766147949
1405_i_at 9.196726295
1431_at 3.426919268
1438_at 8.237470389
1487_at 7.257602633
1494_f_at 5.497573618
1552256_a_at 9.003364051
1552257_a_at 8.522896014
1552258_at 4.378380626
1552261_at 4.497570211
1552263_at 6.50263694
1552264_a_at 8.224133925
1552266_at 4.030102086

Total number of rows: 54675

Table truncated, full table size 1211 Kbytes.




Supplementary file Size Download File type/resource
GSM411351.CEL.gz 7.6 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap