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Sample GSM411339 Query DataSets for GSM411339
Status Public on Jan 26, 2010
Title XXX_682
Sample type RNA
 
Source name XXX_682
Organism Homo sapiens
Characteristics agebin: 1
t: T4
n: N2
grade: 2
her2fish: 1.12
her2fishbin: 0
top2atri: 0
topoihc: 10
esr1bimod: 0
erbb2bimod: 0
final_analysis: YES
pcr: 0
dmfs_event: 1
dmfs_time: 732
os_event: 1
os_time: 732
Extracted molecule total RNA
Extraction protocol Isolation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)olation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc).
Label biotin
Label protocol Approximately 1 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures.
Scan protocol standard Affymetrix procedures.
Description Please see the GSE16446_TOP_README.txt supplementary file on the Series record for a definition of the clinical characteristics
Data processing RMA Bioconductor (default parameters) and log2 transformation.
 
Submission date Jun 02, 2009
Last update date Jun 06, 2022
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL570
Series (1)
GSE16446 Multifactorial Approach to Predicting Resistance to Anthracyclines
Relations
Reanalyzed by GSE205568

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 9.621541322
1053_at 7.793475335
117_at 6.449971205
121_at 7.758306878
1255_g_at 3.058597404
1294_at 6.500865352
1316_at 5.161108423
1320_at 4.798780903
1405_i_at 7.194968974
1431_at 3.463066658
1438_at 7.189825669
1487_at 7.455768431
1494_f_at 5.676745786
1552256_a_at 8.240026966
1552257_a_at 8.300621749
1552258_at 4.41805006
1552261_at 4.728673587
1552263_at 6.179680095
1552264_a_at 7.85954983
1552266_at 3.86041882

Total number of rows: 54675

Table truncated, full table size 1211 Kbytes.




Supplementary file Size Download File type/resource
GSM411339.CEL.gz 7.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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