NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM411312 Query DataSets for GSM411312
Status Public on Jan 26, 2010
Title XXX_4917
Sample type RNA
 
Source name XXX_4917
Organism Homo sapiens
Characteristics agebin: 1
t: T2
n: N1
grade: 3
her2fish: 1.15
her2fishbin: 0
top2atri: 0
topoihc: 25
esr1bimod: 0
erbb2bimod: 0
final_analysis: YES
pcr: 0
dmfs_event: 0
dmfs_time: 771
os_event: 0
os_time: 771
Extracted molecule total RNA
Extraction protocol Isolation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)olation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc).
Label biotin
Label protocol Approximately 1 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures.
Scan protocol standard Affymetrix procedures.
Description Please see the GSE16446_TOP_README.txt supplementary file on the Series record for a definition of the clinical characteristics
Data processing RMA Bioconductor (default parameters) and log2 transformation.
 
Submission date Jun 02, 2009
Last update date Jun 06, 2022
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL570
Series (1)
GSE16446 Multifactorial Approach to Predicting Resistance to Anthracyclines
Relations
Reanalyzed by GSE205568

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 10.4992129
1053_at 8.576121738
117_at 5.360762914
121_at 7.679290781
1255_g_at 2.849790635
1294_at 6.614683909
1316_at 4.817822559
1320_at 4.346578281
1405_i_at 7.583526631
1431_at 3.238258647
1438_at 10.47849212
1487_at 7.609409314
1494_f_at 5.008421166
1552256_a_at 9.88681964
1552257_a_at 8.660803471
1552258_at 4.300495637
1552261_at 4.174012328
1552263_at 5.744311244
1552264_a_at 8.412379962
1552266_at 3.945563531

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM411312.CEL.gz 8.0 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap