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Sample GSM411304 Query DataSets for GSM411304
Status Public on Jan 26, 2010
Title XXX_193
Sample type RNA
 
Source name XXX_193
Organism Homo sapiens
Characteristics agebin: 1
t: T4
n: N1
grade: 2
her2fish: 7.16
her2fishbin: 1
top2atri: 0
topoihc: NA
esr1bimod: 0
erbb2bimod: 1
final_analysis: YES
pcr: 0
dmfs_event: 1
dmfs_time: 376
os_event: 0
os_time: 527
Extracted molecule total RNA
Extraction protocol Isolation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)olation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc).
Label biotin
Label protocol Approximately 1 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures.
Scan protocol standard Affymetrix procedures.
Description Please see the GSE16446_TOP_README.txt supplementary file on the Series record for a definition of the clinical characteristics
Data processing RMA Bioconductor (default parameters) and log2 transformation.
 
Submission date Jun 02, 2009
Last update date Jun 06, 2022
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL570
Series (1)
GSE16446 Multifactorial Approach to Predicting Resistance to Anthracyclines
Relations
Reanalyzed by GSE205568

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 10.94212357
1053_at 8.693499839
117_at 6.694820103
121_at 7.396050701
1255_g_at 3.016380889
1294_at 6.188310286
1316_at 5.164017808
1320_at 4.639295695
1405_i_at 7.197887139
1431_at 3.3724428
1438_at 7.301805188
1487_at 7.519173747
1494_f_at 5.476502091
1552256_a_at 9.239342071
1552257_a_at 8.15591555
1552258_at 4.24115068
1552261_at 4.239420531
1552263_at 5.217528405
1552264_a_at 7.274237087
1552266_at 3.689324021

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM411304.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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