NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM411301 Query DataSets for GSM411301
Status Public on Jan 26, 2010
Title XXX_4617
Sample type RNA
 
Source name XXX_4617
Organism Homo sapiens
Characteristics agebin: 0
t: T1
n: N0
grade: 3
her2fish: 2.26
her2fishbin: 1
top2atri: 0
topoihc: 30
esr1bimod: 0
erbb2bimod: 0
final_analysis: YES
pcr: 0
dmfs_event: 0
dmfs_time: 986
os_event: 0
os_time: 986
Extracted molecule total RNA
Extraction protocol Isolation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)olation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc).
Label biotin
Label protocol Approximately 1 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures.
Scan protocol standard Affymetrix procedures.
Description Please see the GSE16446_TOP_README.txt supplementary file on the Series record for a definition of the clinical characteristics
Data processing RMA Bioconductor (default parameters) and log2 transformation.
 
Submission date Jun 02, 2009
Last update date Jun 06, 2022
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL570
Series (1)
GSE16446 Multifactorial Approach to Predicting Resistance to Anthracyclines
Relations
Reanalyzed by GSE205568

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 9.996094174
1053_at 7.917154229
117_at 5.855777078
121_at 7.51472207
1255_g_at 2.714871345
1294_at 6.904551949
1316_at 6.143080219
1320_at 4.637090426
1405_i_at 9.877121862
1431_at 3.314641397
1438_at 5.583889389
1487_at 7.48654639
1494_f_at 5.476180934
1552256_a_at 7.304906307
1552257_a_at 8.440253347
1552258_at 4.506983932
1552261_at 4.152188555
1552263_at 6.643174076
1552264_a_at 6.522708976
1552266_at 4.36077605

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM411301.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap