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Sample GSM411298 Query DataSets for GSM411298
Status Public on Jan 26, 2010
Title XXX_6787
Sample type RNA
 
Source name XXX_6787
Organism Homo sapiens
Characteristics agebin: 0
t: T2
n: N1
grade: 3
her2fish: 3.7
her2fishbin: 1
top2atri: -1
topoihc: 5
esr1bimod: 0
erbb2bimod: 1
final_analysis: YES
pcr: 0
dmfs_event: 0
dmfs_time: 1404
os_event: 0
os_time: 1404
Extracted molecule total RNA
Extraction protocol Isolation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)olation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc).
Label biotin
Label protocol Approximately 1 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures.
Scan protocol standard Affymetrix procedures.
Description Please see the GSE16446_TOP_README.txt supplementary file on the Series record for a definition of the clinical characteristics
Data processing RMA Bioconductor (default parameters) and log2 transformation.
 
Submission date Jun 02, 2009
Last update date Jun 06, 2022
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL570
Series (1)
GSE16446 Multifactorial Approach to Predicting Resistance to Anthracyclines
Relations
Reanalyzed by GSE205568

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 10.34007395
1053_at 8.93270928
117_at 6.306563063
121_at 7.742827806
1255_g_at 2.74920226
1294_at 7.7759375
1316_at 5.409471973
1320_at 4.449628872
1405_i_at 10.6046989
1431_at 3.28916044
1438_at 7.262525356
1487_at 7.88855353
1494_f_at 5.091055397
1552256_a_at 9.91011063
1552257_a_at 9.464004173
1552258_at 4.179189404
1552261_at 4.774669717
1552263_at 5.80671031
1552264_a_at 7.347069694
1552266_at 3.925287523

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM411298.CEL.gz 7.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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