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Sample GSM411295 Query DataSets for GSM411295
Status Public on Jan 26, 2010
Title XXX_4984
Sample type RNA
 
Source name XXX_4984
Organism Homo sapiens
Characteristics agebin: 0
t: T2
n: N3
grade: 3
her2fish: 3.96
her2fishbin: 1
top2atri: -1
topoihc: 90
esr1bimod: 0
erbb2bimod: 1
final_analysis: YES
pcr: 0
dmfs_event: 0
dmfs_time: 1856
os_event: 0
os_time: 1856
Extracted molecule total RNA
Extraction protocol Isolation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc)olation of RNA was performed using the Trizol method (Invitrogen) according to the manufacturers instructions and was purified using RNeasy mini-columns (Qiagen, Valencia, CA). The quality of the RNA obtained from each tumour sample was assessed based on the RNA profile generated by the bioanalyzer (Agilent Inc).
Label biotin
Label protocol Approximately 1 microgram of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures.
Scan protocol standard Affymetrix procedures.
Description Please see the GSE16446_TOP_README.txt supplementary file on the Series record for a definition of the clinical characteristics
Data processing RMA Bioconductor (default parameters) and log2 transformation.
 
Submission date Jun 02, 2009
Last update date Jun 06, 2022
Contact name Benjamin Haibe-Kains
E-mail(s) benjamin.haibe.kains@utoronto.ca
Phone +14165818626
Organization name Princess Margaret Cancer Centre
Department Princess Margaret Research
Lab Bioinformatics and Computational Genomics
Street address 610 University Avenue
City Toronto
State/province Ontario
ZIP/Postal code M5G 2M9
Country Canada
 
Platform ID GPL570
Series (1)
GSE16446 Multifactorial Approach to Predicting Resistance to Anthracyclines
Relations
Reanalyzed by GSE205568

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1007_s_at 10.19772816
1053_at 8.341121526
117_at 5.250806589
121_at 7.288040801
1255_g_at 2.684556285
1294_at 6.804592844
1316_at 4.833546519
1320_at 4.409329322
1405_i_at 6.979136833
1431_at 3.377001313
1438_at 8.039973619
1487_at 7.445705216
1494_f_at 5.109253777
1552256_a_at 8.117379414
1552257_a_at 8.058118347
1552258_at 3.957224565
1552261_at 4.155798059
1552263_at 6.105374123
1552264_a_at 8.040735965
1552266_at 4.382859749

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM411295.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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