|
| Status |
Public on Feb 12, 2020 |
| Title |
SC68_cr.LB19003 |
| Sample type |
SRA |
| |
|
| Source name |
MDA-SC68_cr
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: CDX flank
patient diagnosis: small cell lung cancer (SCLC)
treatment: cisplatin, relapsed
|
| Treatment protocol |
Mice were untreated
|
| Growth protocol |
Tumors were grown in mice to between 500-800 mm3
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Tumors were collected and RNA extracted using Trizol reagent and purified with a Qiagen RNeasy kit
Sequencing library were constructed following 10x Genomics Chromiun v2 library preparation protocol.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
none
|
| Data processing |
Seqeuncing reads were processed using Cell Ranger v2.0 pipeline (10x Genomics)
Genome_build: hg38
Supplementary_files_format_and_content: UMI reads count were calculated by Cell Ranger v2.0
|
| |
|
| Submission date |
Oct 01, 2019 |
| Last update date |
Oct 23, 2020 |
| Contact name |
Yuanxin Xi |
| E-mail(s) |
xiyuanxin@yahoo.com
|
| Phone |
530-220-2067
|
| Organization name |
The University of Texas MD Anderson Cancer Center
|
| Department |
Bioinformatics and Computational Biology
|
| Street address |
1400 Pressler St
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL11154 |
| Series (2) |
| GSE138267 |
Single-cell analyses reveal increasing intratumoral heterogeneity as an essential component of treatment resistance in small cell lung cancer [RNA-Seq] |
| GSE138474 |
Single-cell analyses reveal increasing intratumoral heterogeneity as an essential component of treatment resistance in small cell lung cancer |
|
| Relations |
| BioSample |
SAMN12881016 |
| SRA |
SRX6931281 |
