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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 01, 2020 |
| Title |
Retina, P14-1 |
| Sample type |
SRA |
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| Source name |
Retina
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| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
tissue: retina
age: post natal day 14
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| Extracted molecule |
total RNA |
| Extraction protocol |
Retinas were removed, flash frozen on dry ice, and RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit (Cat#FC-122-1001) was used with 1 ug of total RNA for the construction of sequencing libraries. Ribosome-deleted RNA.
RNA libraries were prepared for sequencing using standard Illumina protocols
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| Library strategy |
ncRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
HiSeq X Ten |
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| Data processing |
use trimmomatic for filtering
use find_circ and CIRI for predicting
Genome_build: mm9
Supplementary_files_format_and_content: Excel file reports counts.
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| Submission date |
Sep 09, 2019 |
| Last update date |
Sep 01, 2020 |
| Contact name |
xue jiao chen |
| E-mail(s) |
chenxuejiao1022@163.com
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| Organization name |
wenzhou medical university
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| Street address |
xueyuan road
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| City |
wenzhou |
| ZIP/Postal code |
325000 |
| Country |
China |
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| Platform ID |
GPL21273 |
| Series (1) |
| GSE137128 |
circRNAs at 5 time points during retinal development of mouse |
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| Relations |
| BioSample |
SAMN12717193 |
| SRA |
SRX6820980 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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