|
| Status |
Public on May 30, 2009 |
| Title |
PBMC S. aureus INF 90 HG-U133B |
| Sample type |
RNA |
| |
|
| Source name |
PBMC_S.aureus
|
| Organism |
Homo sapiens |
| Characteristics |
age: 0.67y, when sample taken
gender: Male
race: Black
illness: Bacteremia, Suppurative arthritis
treatment: Anti-staphylococcal antibiotic
pathogen: Staphylococcus aureus, methicillin-susceptible
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNEasy Mini Kit
|
| Label |
Biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
|
| |
|
| Hybridization protocol |
EukGE-WS2v4
|
| Scan protocol |
GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 System.
|
| Description |
The subject was infected with Staphylococcus aureus, methicillin-susceptible.
|
| Data processing |
The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
|
| |
|
| Submission date |
May 15, 2009 |
| Last update date |
May 29, 2009 |
| Contact name |
Damien Chaussabel |
| E-mail(s) |
DChaussabel@benaroyaresearch.org
|
| Organization name |
Baylor Institute for Immunology Research
|
| Street address |
3434 Live Oak
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75204 |
| Country |
USA |
| |
|
| Platform ID |
GPL97 |
| Series (1) |
| GSE16129 |
Enhanced Monocyte Response & Decreased Central Memory T Cells in Children with Invasive Staphylococcus aureus Infections |
|
