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Sample GSM403551 Query DataSets for GSM403551
Status Public on May 30, 2009
Title PBMC Healthy Control INF 8N HG-U133A
Sample type RNA
 
Source name PBMC_Healthy
Organism Homo sapiens
Characteristics age: 10y, when sample taken
gender: Male
race: Black
illness: None
treatment: None
pathogen: None
Extracted molecule total RNA
Extraction protocol RNEasy Mini Kit
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol EukGE-WS2v4
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 System.
Description Healthy patient.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date May 15, 2009
Last update date Nov 14, 2018
Contact name Damien Chaussabel
E-mail(s) DChaussabel@benaroyaresearch.org
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL96
Series (1)
GSE16129 Enhanced Monocyte Response & Decreased Central Memory T Cells in Children with Invasive Staphylococcus aureus Infections
Relations
Reanalyzed by GSE122505

Data table header descriptions
ID_REF Affymetrix probe set identifier
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 512.2 P
AFFX-BioB-M_at 987.9 P
AFFX-BioB-3_at 468.1 P
AFFX-BioC-5_at 1321.3 P
AFFX-BioC-3_at 940.7 P
AFFX-BioDn-5_at 1184.9 P
AFFX-BioDn-3_at 6867.6 P
AFFX-CreX-5_at 11622.2 P
AFFX-CreX-3_at 16494.2 P
AFFX-DapX-5_at 25.5 A
AFFX-DapX-M_at 25.1 A
AFFX-DapX-3_at 30.8 A
AFFX-LysX-5_at 23.7 A
AFFX-LysX-M_at 38.9 A
AFFX-LysX-3_at 21.6 A
AFFX-PheX-5_at 8.3 A
AFFX-PheX-M_at 4.3 A
AFFX-PheX-3_at 17.2 A
AFFX-ThrX-5_at 8.7 A
AFFX-ThrX-M_at 7.3 A

Total number of rows: 22283

Table truncated, full table size 402 Kbytes.




Supplementary file Size Download File type/resource
GSM403551.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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