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Sample GSM395736 Query DataSets for GSM395736
Status Public on May 21, 2010
Title SNU89
Sample type RNA
Source name cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 10.60966387
1053_at 5.778832883
117_at 7.374407786
121_at 7.746976757
1255_g_at 2.692951046
1294_at 7.7610409
1316_at 5.893053697
1320_at 3.995141991
1405_i_at 3.044937485
1431_at 4.087553117
1438_at 5.874730833
1487_at 8.195173255
1494_f_at 5.206664785
1598_g_at 9.528585641
160020_at 6.980621788
1729_at 7.353688796
1773_at 5.181790113
177_at 5.237391903
179_at 7.630290722
1861_at 5.224084948

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395736.CEL.gz 1.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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