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Sample GSM395730 Query DataSets for GSM395730
Status Public on May 21, 2010
Title SNU83
Sample type RNA
Source name cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 10.01303801
1053_at 6.022880057
117_at 7.206646323
121_at 7.471542813
1255_g_at 2.714211834
1294_at 7.281503004
1316_at 4.786910349
1320_at 3.896786484
1405_i_at 4.250122358
1431_at 4.108676233
1438_at 8.020453593
1487_at 7.700326689
1494_f_at 4.838461677
1598_g_at 7.810247817
160020_at 7.14641984
1729_at 8.485923123
1773_at 4.883436612
177_at 5.464931466
179_at 7.629162829
1861_at 5.512947855

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395730.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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