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Sample GSM395729 Query DataSets for GSM395729
Status Public on May 21, 2010
Title SNU82
Sample type RNA
Source name cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 11.24878895
1053_at 7.595150927
117_at 6.210991941
121_at 7.535938202
1255_g_at 2.681839949
1294_at 7.415086093
1316_at 5.072662942
1320_at 3.695963286
1405_i_at 4.463873439
1431_at 3.076948856
1438_at 8.326525226
1487_at 7.522846682
1494_f_at 4.661215178
1598_g_at 9.56487033
160020_at 6.855009056
1729_at 7.934617581
1773_at 5.320469252
177_at 4.813688276
179_at 7.72458381
1861_at 6.522423828

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395729.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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