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Sample GSM395726 Query DataSets for GSM395726
Status Public on May 21, 2010
Title SNU79
Sample type RNA
Source name cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 10.21513963
1053_at 6.632110882
117_at 5.494328696
121_at 6.912979945
1255_g_at 2.622669217
1294_at 5.832128132
1316_at 4.92426902
1320_at 3.666427936
1405_i_at 6.088245641
1431_at 3.501612015
1438_at 4.157995455
1487_at 7.592953835
1494_f_at 4.398845153
1598_g_at 7.66606806
160020_at 7.512606694
1729_at 8.399639151
1773_at 4.643966608
177_at 6.143382971
179_at 7.680304877
1861_at 6.674256919

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395726.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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