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Sample GSM395725 Query DataSets for GSM395725
Status Public on May 21, 2010
Title SNU78
Sample type RNA
Source name cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: cholangiocarcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 11.14991219
1053_at 7.086357017
117_at 5.626331433
121_at 6.409562784
1255_g_at 2.726680503
1294_at 6.438713652
1316_at 4.563756669
1320_at 3.874941027
1405_i_at 7.315903742
1431_at 3.100084581
1438_at 4.445501223
1487_at 8.129747912
1494_f_at 4.684142664
1598_g_at 8.480065049
160020_at 6.992582877
1729_at 8.564878214
1773_at 4.545146911
177_at 5.127594482
179_at 7.307597039
1861_at 6.140037345

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395725.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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