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Sample GSM395697 Query DataSets for GSM395697
Status Public on May 21, 2010
Title SNU50
Sample type RNA
Source name hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 6.853158249
1053_at 6.744432303
117_at 5.203015964
121_at 6.398010652
1255_g_at 2.60123667
1294_at 6.762089108
1316_at 4.215587235
1320_at 4.067462965
1405_i_at 6.861735355
1431_at 10.96099074
1438_at 3.884962944
1487_at 6.83957173
1494_f_at 4.752943123
1598_g_at 7.060195478
160020_at 5.85565162
1729_at 7.091661136
1773_at 5.337150133
177_at 4.830651669
179_at 6.829438278
1861_at 6.071105734

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395697.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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