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Sample GSM395693 Query DataSets for GSM395693
Status Public on May 21, 2010
Title SNU46
Sample type RNA
Source name hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 9.727094299
1053_at 6.497989912
117_at 6.316021992
121_at 7.078535649
1255_g_at 2.491998413
1294_at 6.647971999
1316_at 4.350611375
1320_at 3.771281956
1405_i_at 8.077712462
1431_at 4.582520976
1438_at 4.079737805
1487_at 7.274978683
1494_f_at 4.632149571
1598_g_at 7.350525494
160020_at 7.028435284
1729_at 8.030125592
1773_at 4.909545358
177_at 5.870104666
179_at 6.978537452
1861_at 6.932423882

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395693.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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