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Sample GSM395692 Query DataSets for GSM395692
Status Public on May 21, 2010
Title SNU45
Sample type RNA
Source name hepatocellular carcinoma
Organism Homo sapiens
Characteristics tissue: hepatocellular carcinoma
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol 5 ug of total RNA from the HCC tissues was used for labeling according to standard protocols recommended by Affymetrix, Inc
Hybridization protocol Hybridization and detection were performed with Affymetrix Human Genome U133A 2.0 chips according to standard protocols.
Scan protocol GeneChips were scanned GeneChip scanner 3000 using GCOS software
Description Gene expression data from hepatocellular carcinoma
Data processing The data were analyzed with RMA normalization method.
Submission date Apr 21, 2009
Last update date Apr 13, 2010
Contact name Hyun Goo Woo
Organization name Ajou University School of Medicine
Street address 164 Worldcup-ro, Yeongtong-gu
City Suwon
ZIP/Postal code 443-721
Country South Korea
Platform ID GPL571
Series (1)
GSE15765 Identification of cholangiocarcinoma-like gene expression traits in hepatocellular carcinoma

Data table header descriptions

Data table
1007_s_at 7.301886625
1053_at 7.17409834
117_at 6.29178747
121_at 7.055934333
1255_g_at 2.543410073
1294_at 6.061962677
1316_at 5.35396269
1320_at 4.04036279
1405_i_at 5.038857304
1431_at 4.068326038
1438_at 4.353170482
1487_at 7.09501639
1494_f_at 9.7718653
1598_g_at 7.696367463
160020_at 6.478216779
1729_at 7.04342484
1773_at 5.093067477
177_at 6.057501396
179_at 7.168042279
1861_at 6.821618537

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM395692.CEL.gz 1.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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