NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM3856072 Query DataSets for GSM3856072
Status Public on Mar 22, 2020
Title CC485_eCCA
Sample type RNA
 
Source name extrahepatic cholangiocarcinoma
Organism Homo sapiens
Characteristics tissue: extrahepatic cholangiocarcinoma
center: Clinic
Treatment protocol Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
Growth protocol Samples collected after surgical resection and FFPE
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Data processing The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
 
Submission date Jun 06, 2019
Last update date Mar 22, 2020
Contact name Robert Montal
E-mail(s) montalrobert@gmail.com
Organization name IDIBAPS
Street address Rosselló 153
City Barcelona
ZIP/Postal code 08036
Country Spain
 
Platform ID GPL13667
Series (1)
GSE132305 Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma

Data table header descriptions
ID_REF
VALUE Quantile normalization

Data table
ID_REF VALUE
11715100_at 27.61054241
11715101_s_at 17.59109801
11715102_x_at 34.51719722
11715103_x_at 57.95057187
11715104_s_at 35.73721089
11715105_at 15.68002456
11715106_x_at 19.08675761
11715107_s_at 20.57868874
11715108_x_at 18.00935107
11715109_at 19.40112896
11715110_at 17.98563029
11715111_s_at 38.75559519
11715112_at 17.88801061
11715113_x_at 21.96422364
11715114_x_at 22.01240544
11715115_s_at 14.95012732
11715116_s_at 106.7197984
11715117_x_at 14.13062302
11715118_s_at 21.13087243
11715119_s_at 33.47325846

Total number of rows: 49386

Table truncated, full table size 1226 Kbytes.




Supplementary file Size Download File type/resource
GSM3856072_CC485_270317_G08.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap