|
| Status |
Public on Mar 22, 2020 |
| Title |
CC379_eCCA |
| Sample type |
RNA |
| |
|
| Source name |
extrahepatic cholangiocarcinoma
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: extrahepatic cholangiocarcinoma
center: Mayo
|
| Treatment protocol |
Not applicable. Archived tissue was obtained at our Insitution upon patient's consent
|
| Growth protocol |
Samples collected after surgical resection and FFPE
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions
|
| Label |
Biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
Standard Affymetrix protocol
|
| Scan protocol |
Standard Affymetrix protocol
|
| Data processing |
The data were analyzed with GenePattern (Broad Institute) using Expression file creator module and the RMA algorithm.
|
| |
|
| Submission date |
Jun 06, 2019 |
| Last update date |
Mar 22, 2020 |
| Contact name |
Robert Montal |
| E-mail(s) |
montalrobert@gmail.com
|
| Organization name |
IDIBAPS
|
| Street address |
Rosselló 153
|
| City |
Barcelona |
| ZIP/Postal code |
08036 |
| Country |
Spain |
| |
|
| Platform ID |
GPL13667 |
| Series (1) |
| GSE132305 |
Molecular classification and therapeutic targets in extrahepatic cholangiocarcinoma |
|
