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Sample GSM38073

Query DataSets for GSM38073

Status

Public on Jan 15, 2005

Title

Kidney - 8192

Sample type

RNA

Source name

Kidney

Organism

Homo sapiens

Extracted molecule

total RNA

Description

Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Male
Ethnic Background: American Indian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 24
Clinical T: 1b
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma

Submission date

Dec 23, 2004

Last update date

Aug 28, 2018

Contact name

Erin Curley

E-mail(s)

ecurley@intgen.org

Phone

602-343-8808

Fax

602-343-8440

URL

http://www.intgen.org

Organization name

IGC

Department

Lab

expO

Street address

445 N. 5th Street

City

Phoenix

State/province

ZIP/Postal code

85004

Country

USA

Platform ID

GPL570

Series (1)

GSE2109

Expression Project for Oncology (expO)

Relations

Reanalyzed by

GSE64985

Reanalyzed by

GSE119087

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS5, normalized
ABS_CALL	The detection value calculated by the MAS5
DETECTION P-VALUE	The detection p-value calculated by the MAS5

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	736.4	P	0.000662
AFFX-BioB-M_at	1034	P	0.000044
AFFX-BioB-3_at	706.7	P	0.00006
AFFX-BioC-5_at	1895.4	P	0.000052
AFFX-BioC-3_at	2576.1	P	0.000044
AFFX-BioDn-5_at	5197.8	P	0.000044
AFFX-BioDn-3_at	8379.4	P	0.000044
AFFX-CreX-5_at	23266.8	P	0.000052
AFFX-CreX-3_at	28258.4	P	0.000044
AFFX-DapX-5_at	863.5	P	0.000052
AFFX-DapX-M_at	1753.2	P	0.000581
AFFX-DapX-3_at	2209.4	P	0.000052
AFFX-LysX-5_at	154.4	P	0.000095
AFFX-LysX-M_at	280.6	P	0.006871
AFFX-LysX-3_at	479.5	P	0.00007
AFFX-PheX-5_at	178.3	P	0.000044
AFFX-PheX-M_at	271.8	P	0.000662
AFFX-PheX-3_at	317.7	P	0.000225
AFFX-ThrX-5_at	276.1	P	0.000169
AFFX-ThrX-M_at	363.7	P	0.00007

Total number of rows: 54675

Table truncated, full table size 1444 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM38073.CEL.gz	8.3 Mb	(ftp)(http)	CEL
Processed data included within Sample table