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Sample GSM38063 Query DataSets for GSM38063
Status Public on Jan 15, 2005
Title Breast - 8170
Sample type RNA
 
Source name Breast
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.4
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 16
Mammogram: Yes
Number of years in which a mammogram was obtained?: 16-20
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 16-20
Oophorectomy?: No
Fibrocystic disease?: No
Pathological T: 4b
Pathological N: 1a
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma
 
Submission date Dec 23, 2004
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 491.5 P 0.000662
AFFX-BioB-M_at 835.6 P 0.000044
AFFX-BioB-3_at 406.1 P 0.00006
AFFX-BioC-5_at 1946.1 P 0.000044
AFFX-BioC-3_at 2288.2 P 0.000044
AFFX-BioDn-5_at 4827 P 0.000052
AFFX-BioDn-3_at 8979.9 P 0.00006
AFFX-CreX-5_at 18539.6 P 0.000052
AFFX-CreX-3_at 26446.2 P 0.000044
AFFX-DapX-5_at 1021.9 P 0.000052
AFFX-DapX-M_at 2126.5 P 0.000446
AFFX-DapX-3_at 2569.7 P 0.000052
AFFX-LysX-5_at 133.7 P 0.000972
AFFX-LysX-M_at 252.3 P 0.005565
AFFX-LysX-3_at 390.3 P 0.000044
AFFX-PheX-5_at 162.8 P 0.000095
AFFX-PheX-M_at 291.5 P 0.000225
AFFX-PheX-3_at 275.9 P 0.002023
AFFX-ThrX-5_at 291.5 P 0.000195
AFFX-ThrX-M_at 448.4 P 0.000052

Total number of rows: 54675

Table truncated, full table size 1445 Kbytes.




Supplementary file Size Download File type/resource
GSM38063.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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