|
| Status |
Public on Jun 29, 2022 |
| Title |
114_Peach |
| Sample type |
SRA |
| |
|
| Source name |
leaf samples
|
| Organism |
Prunus persica |
| Characteristics |
cultivar/variety: Peach varieties
source: Samples derived from isolator house
tissue: leaf
|
| Extracted molecule |
total RNA |
| Extraction protocol |
CTAB method (Gambino, 2008: https://doi.org/10.1002/pca.1078 )
modified Illumina Trueseq small RNA kit protocol: https://doi.org/10.1007/978-1-4939-7683-6_9
|
| |
|
| Library strategy |
miRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
pooled RNA from leaves of different individuals
|
| Data processing |
The quality check of the sequenced small RNA libraries was done by FastQC program, embedded in CLC
Trimming of raw reads was performed using the CLC
Removing redundant reads using CLC
Supplementary_files_format_and_content: trimmed redundant list, each read with its number of repeats
|
| |
|
| Submission date |
May 08, 2019 |
| Last update date |
Jun 29, 2022 |
| Contact name |
Éva Várallyay |
| E-mail(s) |
varallyay.eva@abc.naik.hu
|
| Organization name |
National Agricultural Research and Innovation Centre
|
| Department |
Agricultural Biotechnology Institute
|
| Lab |
Diagnostics
|
| Street address |
4 Szent-Györgyi Albert Street
|
| City |
Gödöllő |
| ZIP/Postal code |
2100 |
| Country |
Hungary |
| |
|
| Platform ID |
GPL15671 |
| Series (1) |
| GSE130859 |
VIROME OF PEACH TREES IDENTIFIED BY SMALL RNA HTS IN HUNGARY |
|
| Relations |
| BioSample |
SAMN11603731 |
| SRA |
SRX5805552 |
