|
Status |
Public on Mar 28, 2019 |
Title |
tiny124 rep1 |
Sample type |
SRA |
|
|
Source name |
tiny124_whole rosette
|
Organism |
Arabidopsis thaliana |
Characteristics |
genotype/variation: tiny1tiny2tiny4 age: 4-week-old tissue: whole rosette
|
Growth protocol |
4-week-old plants grown in long day (16 hour light/8 hour dark) conditions
|
Extracted molecule |
total RNA |
Extraction protocol |
Zymo DirecZol kit RNA extraction QuantSeq 3’ mRNA-Seq Library Prep FWD Kit
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 2500 |
|
|
Data processing |
BlueBee A. thaliana (TAIR10) Lexogen QuantSeq 2.2.2 FWD pipeline Genome_build: Arabidopsis TAIR10 Supplementary_files_format_and_content: .csv file containing raw counts for each gene and DESeq2 differential expression analysis
|
|
|
Submission date |
Mar 27, 2019 |
Last update date |
Mar 28, 2019 |
Contact name |
Yanhai Yin |
E-mail(s) |
yin@iastate.edu
|
Organization name |
Iowa State University
|
Department |
Genetic Development and Cell Biology
|
Street address |
1035D Roy J. Carver Co-Lab
|
City |
Ames |
State/province |
IA |
ZIP/Postal code |
50011-3650 |
Country |
USA |
|
|
Platform ID |
GPL17639 |
Series (1) |
GSE128946 |
The AP2/ERF Transcription Factor TINY Modulates Brassinosteroid-Regulated Plant Growth and Drought Response in Arabidopsis |
|
Relations |
BioSample |
SAMN11267282 |
SRA |
SRX5583476 |