|
| Status |
Public on Mar 28, 2019 |
| Title |
WT rep1 |
| Sample type |
SRA |
| |
|
| Source name |
WT_whole rosette
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
genotype/variation: WT
age: 4-week-old
tissue: whole rosette
|
| Growth protocol |
4-week-old plants grown in long day (16 hour light/8 hour dark) conditions
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Zymo DirecZol kit RNA extraction
QuantSeq 3’ mRNA-Seq Library Prep FWD Kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Data processing |
BlueBee A. thaliana (TAIR10) Lexogen QuantSeq 2.2.2 FWD pipeline
Genome_build: Arabidopsis TAIR10
Supplementary_files_format_and_content: .csv file containing raw counts for each gene and DESeq2 differential expression analysis
|
| |
|
| Submission date |
Mar 27, 2019 |
| Last update date |
Mar 28, 2019 |
| Contact name |
Yanhai Yin |
| E-mail(s) |
yin@iastate.edu
|
| Organization name |
Iowa State University
|
| Department |
Genetic Development and Cell Biology
|
| Street address |
1035D Roy J. Carver Co-Lab
|
| City |
Ames |
| State/province |
IA |
| ZIP/Postal code |
50011-3650 |
| Country |
USA |
| |
|
| Platform ID |
GPL17639 |
| Series (1) |
| GSE128946 |
The AP2/ERF Transcription Factor TINY Modulates Brassinosteroid-Regulated Plant Growth and Drought Response in Arabidopsis |
|
| Relations |
| BioSample |
SAMN11267288 |
| SRA |
SRX5583470 |
