NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM36488 Query DataSets for GSM36488
Status Public on Apr 01, 2005
Title Nor:HIF1amut rep 2
Sample type RNA
 
Channel 1
Source name HIF1amut transfectant
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Normoxia 16hs
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 51089
Comparison of HIF1amut transfected cells with untreated cells
Array Print: Hs-OperonV2-vB1.2p10-082503
cell_line: HEK293T
 
Submission date Nov 29, 2004
Last update date May 18, 2006
Contact name Victoria Wang
E-mail(s) wangv@mail.nih.gov
Phone 301-402-3630
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2020 Differential Gene Up-regulation by HIF-1a and HIF-2a in HEK293T.

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 1.186 1 1 1 0 0 0 0 0 0 0 0 -50 0.246
1174364_1 1.186 1 1 2 0 0 0 0 0 0 0 0 -50 0.246
1175152_1 1.186 1 1 3 0 0 0 0 0 0 0 0 -50 0.246
1175940_1 1.186 1 1 4 0 0 0 0 0 0 0 0 -50 0.246
1176716_1 1.186 1 1 5 0 0 0 0 0 0 0 0 -50 0.246
1177504_1 0.228 1.171 1 1 6 3993 881 327 108 3923 693 212 74 0 0.228
1178580_1 -0.450 0.732 1 1 7 1753 408 340 117 2501 534 212 72 0 -0.450
1179356_1 0.078 1.056 1 1 8 837 195 349 109 756 174 208 83 0 0.078
1180144_1 -0.212 0.863 1 1 9 1686 381 331 129 2063 396 202 194 0 -0.212
1180932_1 0.082 1.058 1 1 10 638 199 347 103 536 132 210 72 0 0.082
1181708_1 0.029 1.021 1 1 11 774 236 347 111 697 249 201 117 0 0.029
1182496_1 0.364 1.287 1 1 12 575 141 347 108 407 101 197 135 0 0.364
1183572_1 0.117 1.084 1 1 13 686 162 333 104 592 154 206 60 0 0.117
1184348_1 0.100 1.072 1 1 14 614 172 331 112 522 179 209 86 0 0.100
1185136_1 0.461 1 1 15 335 107 328 97 217 62 199 63 -50 -1.117
1185924_1 0.196 1.145 1 1 16 613 183 328 104 501 158 206 70 0 0.196
1186700_1 0.039 1.028 1 1 17 1140 438 313 101 1159 452 205 65 0 0.039
1187488_1 0.196 1.146 1 1 18 802 209 314 169 709 174 204 103 0 0.196
1188564_1 -0.195 0.874 1 1 19 3269 636 331 159 4183 523 197 104 0 -0.195
1189340_1 -0.261 0.834 1 1 20 721 178 336 88 748 215 201 67 0 -0.261

Total number of rows: 21794

Table truncated, full table size 1496 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap