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Sample GSM36486 Query DataSets for GSM36486
Status Public on Apr 01, 2005
Title Nor:HIF1a rep 3
Sample type RNA
 
Channel 1
Source name HIF1a transfectant
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Normoxia 16hs
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 43945
Comparison of HIF1a transfected cells with untreated cells
Array Print: Hs-OperonV2-vB1.1p9-042203
cell_line: HEK293T
 
Submission date Nov 29, 2004
Last update date May 18, 2006
Contact name Victoria Wang
E-mail(s) wangv@mail.nih.gov
Phone 301-402-3630
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2020 Differential Gene Up-regulation by HIF-1a and HIF-2a in HEK293T.

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 3.122 1 1 1 95 38 79 34 101 35 95 39 -50 1.642
1174364_1 0.148 1.108 1 1 2 2178 649 78 37 2316 711 97 42 0 0.148
1175152_1 0.176 1.130 1 1 3 2416 513 83 37 2509 519 91 37 0 0.176
1175940_1 -0.302 0.811 1 1 4 5979 764 85 448 8606 972 98 887 0 -0.302
1176716_1 0.433 1.350 1 1 5 3934 649 90 443 3433 699 100 875 0 0.433
1177504_1 0.913 1.883 1 1 6 8489 914 89 583 5322 701 99 711 0 0.913
1178580_1 -0.043 0.971 1 1 7 2478 546 86 90 2981 527 96 325 0 -0.043
1179356_1 -0.007 0.995 1 1 8 669 189 80 59 788 200 95 73 0 -0.007
1180144_1 -0.044 0.970 1 1 9 2733 539 81 36 3296 689 94 33 0 -0.044
1180932_1 -0.586 0.666 1 1 10 239 96 78 38 376 134 93 34 0 -0.586
1181708_1 0.060 1.043 1 1 11 493 209 78 57 558 176 92 46 0 0.060
1182496_1 -0.590 0.664 1 1 12 183 58 82 46 273 66 95 52 0 -0.590
1183572_1 -0.039 0.973 1 1 13 949 230 81 38 1137 299 93 35 0 -0.039
1184348_1 -1.104 0.465 1 1 14 258 259 80 43 538 936 90 44 0 -1.104
1185136_1 -0.134 0.911 1 1 15 409 123 79 52 521 188 97 32 0 -0.134
1185924_1 -0.608 0.656 1 1 16 235 93 82 57 368 133 95 51 0 -0.608
1186700_1 0.110 1.079 1 1 17 1224 210 78 39 1339 267 96 35 0 0.110
1187488_1 0.341 1.267 1 1 18 1013 223 79 38 954 251 91 38 0 0.341
1188564_1 0.250 1.189 1 1 19 5743 673 82 52 5662 827 89 44 0 0.250
1189340_1 -0.528 0.694 1 1 20 501 167 75 43 806 190 87 36 0 -0.528

Total number of rows: 21794

Table truncated, full table size 1436 Kbytes.




Supplementary data files not provided
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