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Sample GSM36485 Query DataSets for GSM36485
Status Public on Apr 01, 2005
Title Nor:HIF1a rep 2
Sample type RNA
 
Channel 1
Source name HIF1a transfectant
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Normoxia 16hs
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 44962
Comparison of HIF1a transfected cells with untreated cells
Array Print: Hs-OperonV2-vB1.1p9-042203
cell_line: HEK293T
 
Submission date Nov 29, 2004
Last update date May 18, 2006
Contact name Victoria Wang
E-mail(s) wangv@mail.nih.gov
Phone 301-402-3630
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2020 Differential Gene Up-regulation by HIF-1a and HIF-2a in HEK293T.

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 1.172 1 1 1 87 37 83 36 127 43 122 40 -50 0.229
1174364_1 -0.106 0.929 1 1 2 2292 934 85 44 3606 1166 127 39 0 -0.106
1175152_1 0.245 1.185 1 1 3 3618 1195 84 47 4491 1442 123 44 0 0.245
1175940_1 1.098 2.141 1 1 4 9883 1088 86 50 6825 785 121 52 0 1.098
1176716_1 1.219 2.329 1 1 5 9353 948 82 69 5958 859 126 49 0 1.219
1177504_1 0.993 1.991 1 1 6 15507 1202 89 42 11468 890 123 40 0 0.993
1178580_1 -0.308 0.808 1 1 7 2985 732 84 40 5387 1106 125 41 0 -0.308
1179356_1 0.468 1.383 1 1 8 1542 482 84 92 1681 578 137 63 0 0.468
1180144_1 0.278 1.213 1 1 9 7673 1691 92 241 9285 2113 127 78 0 0.278
1180932_1 -0.401 0.758 1 1 10 416 173 85 150 759 245 119 50 0 -0.401
1181708_1 -0.369 0.774 1 1 11 913 241 84 40 1687 443 119 40 0 -0.369
1182496_1 0.060 1.042 1 1 12 414 612 86 37 584 460 123 41 0 0.060
1183572_1 0.022 1.016 1 1 13 921 219 78 36 1339 211 123 40 0 0.022
1184348_1 -0.526 0.695 1 1 14 413 124 82 41 813 191 115 39 0 -0.526
1185136_1 -0.119 0.921 1 1 15 723 359 92 41 1127 515 123 47 0 -0.119
1185924_1 -0.415 0.750 1 1 16 282 114 91 42 490 116 117 45 0 -0.415
1186700_1 -0.259 0.836 1 1 17 2542 429 85 44 4419 873 112 46 0 -0.259
1187488_1 -0.300 0.812 1 1 18 1193 297 86 78 2111 482 114 127 0 -0.300
1188564_1 -0.816 0.568 1 1 19 6695 1139 88 41 17144 1888 111 45 0 -0.816
1189340_1 -0.003 0.998 1 1 20 803 254 83 39 1168 271 111 36 0 -0.003

Total number of rows: 21794

Table truncated, full table size 1467 Kbytes.




Supplementary data files not provided
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