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Sample GSM36484 Query DataSets for GSM36484
Status Public on Apr 01, 2005
Title Nor:HIF1a rep 1
Sample type RNA
 
Channel 1
Source name HIF1a transfectant
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Normoxia 16hs
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 44961
Comparison of HIF1a transfected cells with untreated cells
Array Print: Hs-OperonV2-vB1.1p9-042203
cell_line: HEK293T
 
Submission date Nov 29, 2004
Last update date May 18, 2006
Contact name Victoria Wang
E-mail(s) wangv@mail.nih.gov
Phone 301-402-3630
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2020 Differential Gene Up-regulation by HIF-1a and HIF-2a in HEK293T.

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 2.505 1 1 1 165 63 141 64 151 52 137 116 -50 1.325
1174364_1 0.217 1.162 1 1 2 2901 794 144 93 3602 1058 135 92 0 0.217
1175152_1 0.384 1.305 1 1 3 4150 1080 136 85 4631 981 135 81 0 0.384
1175940_1 0.853 1.807 1 1 4 8279 1136 127 56 6728 1006 134 48 0 0.853
1176716_1 1.036 2.050 1 1 5 8761 933 136 82 6282 1004 134 77 0 1.036
1177504_1 0.762 1.696 1 1 6 13327 1552 138 79 11504 1047 139 72 0 0.762
1178580_1 -0.100 0.933 1 1 7 3776 783 138 65 5832 1013 133 42 0 -0.100
1179356_1 0.397 1.317 1 1 8 1703 382 143 66 1864 290 133 46 0 0.397
1180144_1 0.334 1.260 1 1 9 7997 2141 131 66 9251 2284 130 48 0 0.334
1180932_1 -0.501 0.706 1 1 10 439 151 133 61 763 255 130 47 0 -0.501
1181708_1 0.069 1.049 1 1 11 980 329 136 70 1307 375 131 47 0 0.069
1182496_1 -0.663 0.632 1 1 12 263 105 145 71 408 77 135 43 0 -0.663
1183572_1 -0.089 0.940 1 1 13 726 194 140 65 1043 233 132 45 0 -0.089
1184348_1 -0.377 0.770 1 1 14 466 147 142 60 738 151 123 69 0 -0.377
1185136_1 0.091 1.065 1 1 15 556 190 153 62 677 248 124 42 0 0.091
1185924_1 -0.392 0.762 1 1 16 301 114 132 98 451 74 127 88 0 -0.392
1186700_1 0.028 1.020 1 1 17 2610 855 127 58 3681 979 123 44 0 0.028
1187488_1 0.600 1.516 1 1 18 1906 1065 125 55 1845 593 128 47 0 0.600
1188564_1 0.304 1.235 1 1 19 12644 1998 130 57 14943 2348 129 45 0 0.304
1189340_1 -0.266 0.832 1 1 20 496 170 121 61 784 201 125 45 0 -0.266

Total number of rows: 21794

Table truncated, full table size 1489 Kbytes.




Supplementary data files not provided
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